PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009111687.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 264aa    MW: 29078.9 Da    PI: 9.7634
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009111687.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00011105127123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ Cgk F++   L  H  +H
  XP_009111687.1 105 YKCSVCGKAFPSYQALGGHKASH 127
                     9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.58E-9105127No hitNo description
SMARTSM003550.0043105127IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-4105127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-13105128IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.616105127IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SuperFamilySSF576677.58E-9155182No hitNo description
PROSITE profilePS501579.078160182IPR007087Zinc finger, C2H2
SMARTSM003550.15160182IPR015880Zinc finger, C2H2-like
PfamPF139124.6E-13160184IPR007087Zinc finger, C2H2
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MALEAMNSPS FTVRKDRIEA TNDDLTNDAV FMEPWLKRKR SKRQRSRSPS PSTSSSSPPR  60
SRRPKYESQD LTEEEYLALC LLKLAKDKHS PPPQPQPRDS TKLSYKCSVC GKAFPSYQAL  120
GGHKASHRIK PLTADNSTSP IIAGEKHHSS ATVPPSGKIH ECSICRKVFP TGQALGGHKR  180
CHYEGNLGGG SKSISQSGSV SSTVSEDRSN RVLIDLNLPA LPELSLHHNP VVDDEILSPL  240
TGKKPLLLTD RDRVIEKEDL SLRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13542LKRKRSKR
24146KRQRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.10840.0root| silique
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111687.10.0PREDICTED: zinc finger protein AZF2-like
SwissprotQ9SSW21e-102AZF2_ARATH; Zinc finger protein AZF2
TrEMBLM4FAV40.0M4FAV4_BRARP; Uncharacterized protein
STRINGBra038219.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102721829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.28e-82zinc-finger protein 2